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Bowtie2

A fast aligner for short reads. Widely used for aligning DNA and RNA-seq reads to a reference genome. Part of many standard pipelines.

Example in a sentence

Bowtie2 was used for the ChIP-seq alignment.

Key facts

  • Short-read aligner; fast and sensitive.
  • DNA and RNA-seq; part of many pipelines.

Category: Analysis Methods

Authoritative references

Related terms

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Bowtie2 | Bioinformatics Glossary | GENOS.bio